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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3761328_3761656_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3761328 - 3761656
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
AATGTCTTATGT
Flanking Amino Acid:
YGSLHTHDRLSYPPHSVSPT
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
29.3
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
83.3
0.75
0.7
76.9
31.9
Minor 5ss
43
-0.8
2.8
56.6
41.9
Minor BPS
48.5
-0
2
66.68
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007225
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007562
3750728 - 3785957
35230