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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3763245_3767489_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3763245 - 3767489
Intron Length:
4245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TTTCTGTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TGATATAAAACC
Flanking Amino Acid:
GDALGKALASIYSPDHTSSS
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.1
76.5
34
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
79.6
0.67
0.8
73
37.3
Minor 5ss
36.8
-1.5
2.9
52.2
44.4
Minor BPS
45
-0.4
2
58.04
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007225
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007562
3750728 - 3785957
35230