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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3773220_3773932_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3773220 - 3773932
Intron Length:
713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTATTT
5'SS Class:
major
3'SS Sequence:
TCAATCCCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TCCTCTTCAATC
Flanking Amino Acid:
AMSFLKDVCEQSRMEDRLDR
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.1
74.6
36.4
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
65.2
0.34
1
59.1
36.7
Minor 5ss
42.9
-0.8
3.4
65.4
45.7
Minor BPS
60.9
0.32
1.5
65.76
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007225
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007562
3750728 - 3785957
35230