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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3781106_3782416_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3781106 - 3782416
Intron Length:
1311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CACTTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTCTATTTACAC
Flanking Amino Acid:
DIKVSSRGRTSSTNEDEDLN
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.4
38.7
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
82.2
0.72
0.8
76.5
31.7
Minor 5ss
27.7
-2.6
3
34.2
42
Minor BPS
49.4
-0
1.9
64.09
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007225
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007562
3750728 - 3785957
35230