About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3843092_3843580_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3843092 - 3843580
Intron Length:
489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TACTTTTTGACA
Flanking Amino Acid:
KTFSSVPNTQATPDLLKGQQ
Intron Amino Acid Position:
531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
80.7
34.7
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
83.8
0.76
0.7
82
30
Minor 5ss
43.9
-0.7
2.8
58.4
46.2
Minor BPS
67
0.53
1.2
70.1
36.3

Associated Gene:

Gene:
CGNL1
Ensembl Gene ID:
ENSAPLG00000007650
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007971
3841502 - 3875227
33726