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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3843676_3844642_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3843676 - 3844642
Intron Length:
967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTCAGTAAA
5'SS Class:
major
3'SS Sequence:
CTCTGTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
CATTGCTTACTT
Flanking Amino Acid:
KQILYNYLKEGSADNDDATK
Intron Amino Acid Position:
562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.3
74.1
38.3
Major BPS
84
0.85
0.9
75
39.9
Major PPT
74.8
0.56
0.9
72.5
37.7
Minor 5ss
30
-2.3
2.4
25.9
36.2
Minor BPS
53.3
0.18
2.1
72.44
45

Associated Gene:

Gene:
CGNL1
Ensembl Gene ID:
ENSAPLG00000007650
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007971
3841502 - 3875227
33726