Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3844737_3845778_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3844737 - 3845778

Intron Length:

1042

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAAATTTT

5'SS Class:

strong_major

3'SS Sequence:

TATTTAATTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

ATCTATTTAATT

Flanking Amino Acid:

LKSRAAGKTPVSDSSAEVKA

Intron Amino Acid Position:

594

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

81.5

32.9

Major BPS

90.7

1.01

0.7

19.9

Major PPT

81.3

0.71

0.9

75.2

38.3

Minor 5ss

-0.4

67.5

43.6

Minor BPS

67.4

0.62

1.4

78.91

37.7

Associated Gene:

Gene:

CGNL1

Ensembl Gene ID:

ENSAPLG00000007650

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007971

3841502 - 3875227

33726