Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3845881_3846814_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3845881 - 3846814

Intron Length:

934

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTACTGCCC

5'SS Class:

weak_major

3'SS Sequence:

GTACAAAAAATAG|A

3'SS Class:

major_hybrid

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TCTTGCTTAACT

Flanking Amino Acid:

LQKKLDLEIRNQQNTKEERD

Intron Amino Acid Position:

628

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

57.9

0.19

1.2

45.8

40.8

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

48.1

-0.1

38.3

37.6

Minor 5ss

30.6

-2.2

3.4

34.4

41.5

Minor BPS

77.9

0.95

1.7

91.67

38.1

Associated Gene:

Gene:

CGNL1

Ensembl Gene ID:

ENSAPLG00000007650

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007971

3841502 - 3875227

33726