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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3847609_3848582_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3847609 - 3848582
Intron Length:
974

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TAACGATCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTATTTTTGATT
Flanking Amino Acid:
DEGEKEVLIEELMQMKQDLQ
Intron Amino Acid Position:
723

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1.1
85.2
27
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
64.1
0.32
1
59.8
41.3
Minor 5ss
38.2
-1.3
2.8
50
46.3
Minor BPS
71.1
0.75
1.1
82.58
32.6

Associated Gene:

Gene:
CGNL1
Ensembl Gene ID:
ENSAPLG00000007650
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007971
3841502 - 3875227
33726