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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3848796_3863515_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3848796 - 3863515
Intron Length:
14720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAAGAA
5'SS Class:
major
3'SS Sequence:
TTGTTTTCACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GCTTTTTTAAAA
Flanking Amino Acid:
LQQSLEKATKNAAVLASERN
Intron Amino Acid Position:
794

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
0.9
69.8
29.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.9
0.58
0.9
71.3
39.5
Minor 5ss
23.6
-3
3.1
28.7
43.6
Minor BPS
64.8
0.46
1.4
68.55
37.9

Associated Gene:

Gene:
CGNL1
Ensembl Gene ID:
ENSAPLG00000007650
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007971
3841502 - 3875227
33726