Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3863723_3863923_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3863723 - 3863923

Intron Length:

201

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGCTGA

5'SS Class:

strong_major

3'SS Sequence:

TATGTAATTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTAAT

U12 Branch Point Sequence:

ATGTATCTAACT

Flanking Amino Acid:

SVKEKIKRCEEEKQQLEEAL

Intron Amino Acid Position:

863

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.8

0.91

0.9

38.1

Major BPS

75.6

0.64

1.1

75.7

36.5

Major PPT

74.8

0.56

67.5

42.3

Minor 5ss

43.2

-0.7

2.9

56.2

47.9

Minor BPS

55.9

0.26

1.9

76.13

40.3

Associated Gene:

Gene:

CGNL1

Ensembl Gene ID:

ENSAPLG00000007650

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007971

3841502 - 3875227

33726