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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3864029_3866126_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3864029 - 3866126
Intron Length:
2098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TAATTTACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTATAT
Flanking Amino Acid:
SLESQLEDMQENIRCISQER
Intron Amino Acid Position:
898

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
100
1.24
0.5
100
0
Major PPT
77.1
0.61
0.9
71.2
39
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
62.9
0.48
2
86.88
38.3

Associated Gene:

Gene:
CGNL1
Ensembl Gene ID:
ENSAPLG00000007650
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007971
3841502 - 3875227
33726