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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3866913_3868355_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3866913 - 3868355
Intron Length:
1443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCGTGAT
U12 Branch Point Sequence:
GTTACCGTGATA
Flanking Amino Acid:
RLTTMRMQDEMRLMEENLRD
Intron Amino Acid Position:
1006

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
78
36.1
Major BPS
56.3
0.16
1.3
48.7
45.1
Major PPT
89.4
0.89
0.8
88
29.4
Minor 5ss
35
-1.7
3.2
50
45.9
Minor BPS
51.7
0.05
2.1
67.77
38.7

Associated Gene:

Gene:
CGNL1
Ensembl Gene ID:
ENSAPLG00000007650
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007971
3841502 - 3875227
33726