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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3911740_3912630_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3911740 - 3912630
Intron Length:
891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTACGTATA
5'SS Class:
major
3'SS Sequence:
TTCTCGTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TATATGTTAATG
Flanking Amino Acid:
KHKAEKEILLEETNRLLKAI
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
73.7
36.8
Major BPS
84.4
0.85
1
84
34.5
Major PPT
73.7
0.53
1
74
34.5
Minor 5ss
40.1
-1.1
3
52.2
39.9
Minor BPS
50.3
-0.1
2.1
60.66
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008051
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008386
3907333 - 3941794
34462