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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3930298_3930954_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3930298 - 3930954
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TACTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TTCTGTTGAAAA
Flanking Amino Acid:
LEKISFLECENKELQDKLDY
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.6
37.2
Major BPS
62
0.3
1
62.3
30.4
Major PPT
82
0.72
0.9
75.8
37.9
Minor 5ss
32.4
-2
3.4
46.7
48.6
Minor BPS
49.2
-0
2
65.08
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008051
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008386
3907333 - 3941794
34462