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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3939811_3940142_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3939811 - 3940142
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TGCATCTCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
TTTTCCTGCATC
Flanking Amino Acid:
VIKRSKFRTNVNSSSRCIAG
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
83.8
34.5
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
75.9
0.58
0.9
68.8
37.2
Minor 5ss
43.7
-0.7
2.9
61.3
43
Minor BPS
63.7
0.41
1.9
79.19
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008051
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028111
3938925 - 3941794
2870