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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3939811_3940475_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3939811 - 3940475
Intron Length:
665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TTATTACTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GTTTTATTACTT
Flanking Amino Acid:
VIKRSKFRTNVLSGEQSGSS
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
83.8
34.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
79.7
0.67
0.8
74.9
34.8
Minor 5ss
43.7
-0.7
2.9
61.3
43
Minor BPS
56.3
0.27
1.9
77.3
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008051
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020116
3938925 - 3941794
2870
ENSAPLT00000008386
3907333 - 3941794
34462