Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_3940166_3940537_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3940166 - 3940537

Intron Length:

372

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

TTG|GCAATAGTA

5'SS Class:

major

3'SS Sequence:

TCACCTGGGGGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCCTCAT

U12 Branch Point Sequence:

GGTTCCTCATCC

Flanking Amino Acid:

TNVNSSSRCIAGSPITTEER

Intron Amino Acid Position:

277

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.5

0.41

1.3

67.1

40.8

Major BPS

82.3

0.8

0.9

81.8

30.8

Major PPT

-0.3

1.7

45.5

41.1

Minor 5ss

23.9

-3

4.2

35.1

43.3

Minor BPS

57.2

0.21

1.9

68.74

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008051

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028111

3938925 - 3941794

2870