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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4026868_4031580_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4026868 - 4031580
Intron Length:
4713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGAACCTGCATT
Flanking Amino Acid:
GFKMSGNGREMGESGLREYS
Intron Amino Acid Position:
478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
48.3
-0
1.9
67.63
42.8

Associated Gene:

Gene:
ALDH1A2
Ensembl Gene ID:
ENSAPLG00000008541
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022775
4026795 - 4058063
31269