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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4031521_4031580_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4031521 - 4031580
Intron Length:
60

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TAACAAACATTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTAACAA
U12 Branch Point Sequence:
TACAACTTAACA
Flanking Amino Acid:
GFKMSGNGREIECKLRSGHI
Intron Amino Acid Position:
478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
61.8
0.29
1.1
69.7
35.6
Major PPT
50.5
0.01
1
47
39.7
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
64.8
0.46
1.6
70.71
40.8

Associated Gene:

Gene:
ALDH1A2
Ensembl Gene ID:
ENSAPLG00000008541
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008981
4031460 - 4058063
26604