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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4055184_4056661_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4055184 - 4056661
Intron Length:
1478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTGGC
5'SS Class:
major
3'SS Sequence:
TCTTGTTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATATATTGACT
Flanking Amino Acid:
LVERDRATLATMESLNSGKP
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
63.9
41
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.9
0.69
0.8
73.6
37
Minor 5ss
35.9
-1.6
3.3
53.5
43.7
Minor BPS
59.6
0.38
1.7
77.87
37.9

Associated Gene:

Gene:
ALDH1A2
Ensembl Gene ID:
ENSAPLG00000008541
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022775
4026795 - 4058063
31269
ENSAPLT00000008981
4031460 - 4058063
26604