About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4057141_4057997_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4057141 - 4057997
Intron Length:
857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTATTTCAT
5'SS Class:
weak_major
3'SS Sequence:
TCTCCTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GACTGATGACTT
Flanking Amino Acid:
VRTSPSAFEAIFINNEWQNS
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.5
0.15
1.2
56.7
41.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
83.5
0.75
0.7
76.7
32
Minor 5ss
45
-0.5
2.9
68.3
42.4
Minor BPS
38.6
-0.7
2.1
51.76
42.7

Associated Gene:

Gene:
ALDH1A2
Ensembl Gene ID:
ENSAPLG00000008541
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022775
4026795 - 4058063
31269
ENSAPLT00000008981
4031460 - 4058063
26604