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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4107446_4109050_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4107446 - 4109050
Intron Length:
1605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TGTTTTCTACAG
Flanking Amino Acid:
GAAAVFGIYYDAFMEYSNGT
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
77.1
33
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
85.1
0.79
0.8
80
32.2
Minor 5ss
31.1
-2.2
2.6
35.6
40.5
Minor BPS
44.3
-0.5
2
53.38
41.6

Associated Gene:

Gene:
AQP9
Ensembl Gene ID:
ENSAPLG00000010168
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010612
4099059 - 4115862
16804