About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4109170_4110839_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4109170 - 4110839
Intron Length:
1670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTGCATTGGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTCAATA
Flanking Amino Acid:
LSLINGFADQVMSTAVLLLA
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
63.5
0.3
1.2
57.7
47.1
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
58.2
0.25
1.7
71.02
35

Associated Gene:

Gene:
AQP9
Ensembl Gene ID:
ENSAPLG00000010168
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010612
4099059 - 4115862
16804