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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4111058_4115702_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4111058 - 4115702
Intron Length:
4645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
TTATTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TATTTCTTACAG
Flanking Amino Acid:
AIAGWGMEVFTAGNNWWWVP
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1.3
77.9
38.6
Major BPS
76.8
0.67
1
66
40.9
Major PPT
89.3
0.88
0.7
84.4
30.3
Minor 5ss
36.5
-1.5
2.7
41.7
38.2
Minor BPS
58.1
0.12
1.8
65.42
42.2

Associated Gene:

Gene:
AQP9
Ensembl Gene ID:
ENSAPLG00000010168
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010612
4099059 - 4115862
16804