About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4204235_4208458_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4204235 - 4208458
Intron Length:
4224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGAACT
5'SS Class:
major
3'SS Sequence:
TGTTATCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTCTCCATCT
Flanking Amino Acid:
PLVMIVHGWSESIQFSRSNV
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
71.2
38.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
82.8
0.74
0.9
73.8
41.4
Minor 5ss
42.7
-0.8
2.9
60
44.1
Minor BPS
51.2
0.12
2.1
80.99
40.7

Associated Gene:

Gene:
LIPC
Ensembl Gene ID:
ENSAPLG00000014018
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042805
4204031 - 4219458
15428