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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4205971_4208458_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4205971 - 4208458
Intron Length:
2488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGCG
5'SS Class:
strong_major
3'SS Sequence:
TGTTATCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTCTCCATCT
Flanking Amino Acid:
EIADFLEWLEESIQFSRSNV
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
70.5
38.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
82.8
0.74
0.9
73.8
41.4
Minor 5ss
29.5
-2.3
3.4
38.5
46.7
Minor BPS
51.2
0.12
2.1
80.99
40.7

Associated Gene:

Gene:
LIPC
Ensembl Gene ID:
ENSAPLG00000014018
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018902
4204031 - 4218061
14031
ENSAPLT00000014624
4204031 - 4219458
15428