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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4208577_4210609_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4208577 - 4210609
Intron Length:
2033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAC
5'SS Class:
strong_major
3'SS Sequence:
GCATTTATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTTGCATTTATT
Flanking Amino Acid:
SGTTKIGRITGLDPAGPLFE
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
77.5
30.5
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
72
0.5
0.9
66.5
39.2
Minor 5ss
33.1
-1.9
3
42.8
44.4
Minor BPS
56.7
0.29
2
81.12
40.6

Associated Gene:

Gene:
LIPC
Ensembl Gene ID:
ENSAPLG00000014018
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014624
4204031 - 4219458
15428
ENSAPLT00000042805
4204031 - 4219458
15428
ENSAPLT00000018902
4204031 - 4218061
14031