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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4212550_4216617_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4212550 - 4216617
Intron Length:
4068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTCGTGGG
5'SS Class:
major
3'SS Sequence:
TTCCTTTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
ACTGTCTAAATT
Flanking Amino Acid:
LKTRARMPFKVYHYQFKIHF
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.2
59.3
45.5
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
88.2
0.86
0.6
83.5
24.9
Minor 5ss
27.4
-2.6
3
32.8
42
Minor BPS
53.5
0.19
1.8
68.91
43

Associated Gene:

Gene:
LIPC
Ensembl Gene ID:
ENSAPLG00000014018
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042805
4204031 - 4219458
15428
ENSAPLT00000018902
4204031 - 4218061
14031
ENSAPLT00000014624
4204031 - 4219458
15428