About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4216739_4217451_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4216739 - 4217451
Intron Length:
713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTGTTTACTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTTTGTTTACT
Flanking Amino Acid:
KEDAKNLPITVLEGINGNKT
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.1
79.9
34.9
Major BPS
80
0.75
1
78.6
31
Major PPT
83.3
0.75
0.8
78.5
34.7
Minor 5ss
38.2
-1.3
3
52.2
44.4
Minor BPS
60.1
0.4
2.3
87.49
38.1

Associated Gene:

Gene:
LIPC
Ensembl Gene ID:
ENSAPLG00000014018
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042805
4204031 - 4219458
15428
ENSAPLT00000018902
4204031 - 4218061
14031
ENSAPLT00000014624
4204031 - 4219458
15428