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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4217671_4217988_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4217671 - 4217988
Intron Length:
318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTTAGGAACAGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTTAGGAACA
Flanking Amino Acid:
IRVKAGETQQKIEELANRYK
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.3
26.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
44.7
-0.3
1.7
42.8
41.2
Minor 5ss
38
-1.4
3.3
49.4
41.3
Minor BPS
45.8
-0.3
2.3
64.76
41.6

Associated Gene:

Gene:
LIPC
Ensembl Gene ID:
ENSAPLG00000014018
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018902
4204031 - 4218061
14031