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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4226185_4226889_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4226185 - 4226889
Intron Length:
705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TAAATGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CATTTTTTAAAT
Flanking Amino Acid:
LYENIAEWIVAHWWAVLLMG
Intron Amino Acid Position:
639

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.8
0.45
1
66.4
44.5
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
67.5
0.63
1.4
77.65
38.8

Associated Gene:

Gene:
ADAM10
Ensembl Gene ID:
ENSAPLG00000013495
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014170
4225511 - 4261374
35864