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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4227111_4227402_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4227111 - 4227402
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
ATTCACTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGTTTTGAACT
Flanking Amino Acid:
ELCHVCCMRKMDPSTCASTG
Intron Amino Acid Position:
565

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
84.4
26.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.5
0.69
0.9
73.7
35.8
Minor 5ss
45.6
-0.5
3.1
65.7
39.5
Minor BPS
65.9
0.58
1.4
78.59
37.8

Associated Gene:

Gene:
ADAM10
Ensembl Gene ID:
ENSAPLG00000013495
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014170
4225511 - 4261374
35864