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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4233982_4236133_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4233982 - 4236133
Intron Length:
2152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGTA
5'SS Class:
strong_major
3'SS Sequence:
GGTTTAAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTGGTTTAAAT
Flanking Amino Acid:
LGLAWVGAPSGSSGGICEKS
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1.1
81.5
32.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
67.5
0.39
1.1
60.3
44.2
Minor 5ss
41.8
-0.9
3.2
58.1
46.5
Minor BPS
58.9
0.36
2
80.63
41.5

Associated Gene:

Gene:
ADAM10
Ensembl Gene ID:
ENSAPLG00000013495
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014170
4225511 - 4261374
35864