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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4237043_4238239_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4237043 - 4238239
Intron Length:
1197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCCA
5'SS Class:
major
3'SS Sequence:
TGGTTTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
GATCTTTGAACT
Flanking Amino Acid:
YGTREAVIAQISSHVKAIDT
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
66.1
39.2
Major BPS
74.8
0.62
1
67
39.8
Major PPT
75.4
0.57
1.1
72.2
42.7
Minor 5ss
40.7
-1
2.7
51.5
44.8
Minor BPS
58.6
0.35
1.4
72.24
38.1

Associated Gene:

Gene:
ADAM10
Ensembl Gene ID:
ENSAPLG00000013495
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014170
4225511 - 4261374
35864