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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4248500_4261282_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4248500 - 4261282
Intron Length:
12783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTATTCACTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTCACT
Flanking Amino Acid:
FLRLDFHAHGRHFNLRMKRD
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1.1
77.3
37.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.6
0.71
0.8
79.1
33.9
Minor 5ss
30.8
-2.2
3.1
41.8
44.7
Minor BPS
64.2
0.53
2
88.65
36.2

Associated Gene:

Gene:
ADAM10
Ensembl Gene ID:
ENSAPLG00000013495
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014170
4225511 - 4261374
35864