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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4274264_4281851_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4274264 - 4281851
Intron Length:
7588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCGGGG
5'SS Class:
major
3'SS Sequence:
TTTACTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTACTTTCACA
Flanking Amino Acid:
MNVLLLAWKVKLPPMMEII
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.3
51
43.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.7
0.78
0.8
79.8
32.1
Minor 5ss
32.8
-2
3.8
46.4
49
Minor BPS
66.8
0.52
1.8
79.82
36.4

Associated Gene:

Gene:
MINDY2
Ensembl Gene ID:
ENSAPLG00000013166
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013737
4274032 - 4297334
23303