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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4276097_4281851_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4276097 - 4281851
Intron Length:
5755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTACTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTACTTTCACA
Flanking Amino Acid:
MNTRLGQVKLPPMMEII
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
89
24.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.7
0.78
0.8
79.8
32.1
Minor 5ss
39.4
-1.2
2.8
51.5
45
Minor BPS
66.8
0.52
1.8
79.82
36.4

Associated Gene:

Gene:
MINDY2
Ensembl Gene ID:
ENSAPLG00000013166
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038263
4274032 - 4297334
23303