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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4286145_4287586_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4286145 - 4287586
Intron Length:
1442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTGCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TCTTCACAAAGA
Flanking Amino Acid:
LYHGWLVDPQVADIVKAVGN
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1.1
87.9
29.3
Major BPS
77.5
0.68
1
79.6
33
Major PPT
77.8
0.62
0.9
69.1
37
Minor 5ss
55.9
0.2
2.5
76
39.7
Minor BPS
43.2
-0.5
2.4
60.88
45

Associated Gene:

Gene:
MINDY2
Ensembl Gene ID:
ENSAPLG00000013166
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013737
4274032 - 4297334
23303
ENSAPLT00000038263
4274032 - 4297334
23303