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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4295506_4296978_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4295506 - 4296978
Intron Length:
1473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTACATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTTTATTCAAAA
Flanking Amino Acid:
EQEQAAAQVQQVQGAPSVAS
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
80.3
0.68
0.8
77.3
30.4
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
57.3
0.23
1.8
74.17
37

Associated Gene:

Gene:
MINDY2
Ensembl Gene ID:
ENSAPLG00000013166
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038263
4274032 - 4297334
23303
ENSAPLT00000013737
4274032 - 4297334
23303