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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4315555_4315641_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4315555 - 4315641
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCTAACAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCTCTCCTAACA
Flanking Amino Acid:
KKTTSSDKASKTPSTKKEEK
Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
80.9
31
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
57.6
0.17
1.1
57.4
36.7
Minor 5ss
37.8
-1.4
3
51.4
38.8
Minor BPS
62.1
0.38
1.7
73.2
38.4

Associated Gene:

Gene:
SLTM
Ensembl Gene ID:
ENSAPLG00000013025
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046857
4308292 - 4333403
25112
ENSAPLT00000013588
4308292 - 4333403
25112