Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4315989_4317480_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4315989 - 4317480

Intron Length:

1492

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTCCAT

5'SS Class:

major

3'SS Sequence:

CCTCTTTACGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTCAC

U12 Branch Point Sequence:

AAAACCTAAATT

Flanking Amino Acid:

LKNLFGKYGKVLGAKVVTNA

Intron Amino Acid Position:

422

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.9

0.49

1.1

63.4

42.5

Major BPS

81.3

0.78

0.8

83.4

26.1

Major PPT

76.3

0.59

0.8

72.3

31.2

Minor 5ss

45.7

-0.5

2.9

46.3

Minor BPS

56.5

0.28

1.7

69.51

41.1

Associated Gene:

Gene:

SLTM

Ensembl Gene ID:

ENSAPLG00000013025

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046857

4308292 - 4333403

25112

ENSAPLT00000013588

4308292 - 4333403

25112