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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4360627_4363422_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4360627 - 4363422
Intron Length:
2796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TACCTTTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTTAA
U12 Branch Point Sequence:
GTTAAGCTAATA
Flanking Amino Acid:
VEIVTVGESYRSRSTLGHSR
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.7
83.1
30.9
Major BPS
64.3
0.36
1.2
55.7
41.6
Major PPT
74.4
0.55
1
78.7
33.2
Minor 5ss
29.6
-2.3
2.6
32.5
42.4
Minor BPS
42.5
-0.5
2.4
58.86
40.5

Associated Gene:

Gene:
RNF111
Ensembl Gene ID:
ENSAPLG00000012549
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013094
4333478 - 4383556
50079
ENSAPLT00000024055
4333478 - 4383556
50079
ENSAPLT00000022205
4350235 - 4383556
33322