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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4368316_4369057_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4368316 - 4369057
Intron Length:
742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
GTTTTCATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTGTTTTCATT
Flanking Amino Acid:
SSCRHYMHSPYASLTRPLHH
Intron Amino Acid Position:
680

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
77.8
36.6
Major BPS
100
1.24
0.5
100
0
Major PPT
84.1
0.77
0.8
78.2
34.9
Minor 5ss
41.3
-1
2.8
62.9
41
Minor BPS
50.4
0.09
1.8
69.97
42.5

Associated Gene:

Gene:
RNF111
Ensembl Gene ID:
ENSAPLG00000012549
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013094
4333478 - 4383556
50079
ENSAPLT00000024055
4333478 - 4383556
50079
ENSAPLT00000022205
4350235 - 4383556
33322