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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4369410_4371900_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4369410 - 4371900
Intron Length:
2491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTATGTCAC
5'SS Class:
major
3'SS Sequence:
GTTTTGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
GTGGAATTAACT
Flanking Amino Acid:
VQRRRMMQHPTRAHERPPPH
Intron Amino Acid Position:
797

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.47
1.3
65
41.2
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
83
0.74
0.8
81.2
36.5
Minor 5ss
42
-0.9
2.8
51.9
38.5
Minor BPS
51.6
0.13
1.9
71.1
45.1

Associated Gene:

Gene:
RNF111
Ensembl Gene ID:
ENSAPLG00000012549
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024055
4333478 - 4383556
50079
ENSAPLT00000022205
4350235 - 4383556
33322
ENSAPLT00000013094
4333478 - 4383556
50079