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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4372905_4379845_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4372905 - 4379845
Intron Length:
6941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
ATATTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TATTTCTTGATA
Flanking Amino Acid:
HLQIGALPLMELIHLEERLG
Intron Amino Acid Position:
882

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
71.4
40.1
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
80.3
0.68
0.8
78.5
35.1
Minor 5ss
31.8
-2.1
3.1
36.7
42.5
Minor BPS
75.1
0.78
1
78.49
31.3

Associated Gene:

Gene:
RNF111
Ensembl Gene ID:
ENSAPLG00000012549
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024055
4333478 - 4383556
50079