About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4379942_4381562_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4379942 - 4381562
Intron Length:
1621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGATT
5'SS Class:
strong_major
3'SS Sequence:
TTGGTTCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TCTCTACTAATA
Flanking Amino Acid:
RCTYPHKYKKRKLHCKQDGE
Intron Amino Acid Position:
945

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
87.7
28
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
78.1
0.63
0.9
72.5
37.8
Minor 5ss
32.8
-2
3.3
47.8
47.9
Minor BPS
47.8
-0.1
1.9
62.28
37.9

Associated Gene:

Gene:
RNF111
Ensembl Gene ID:
ENSAPLG00000012549
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024055
4333478 - 4383556
50079
ENSAPLT00000022205
4350235 - 4383556
33322
ENSAPLT00000013094
4333478 - 4383556
50079