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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4382341_4382423_F

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4382341 - 4382423
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTGTA
5'SS Class:
major
3'SS Sequence:
TGCCTAGTGAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGGACAT
U12 Branch Point Sequence:
TGAGGCTCAACT
Flanking Amino Acid:
RLPCMHLFHQLTPFSRTMVL
Intron Amino Acid Position:
958

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76.9
31.6
Major BPS
52.4
0.06
1.3
60.7
45.9
Major PPT
50.8
0.02
1.2
51.5
41.1
Minor 5ss
44.1
-0.6
3.1
57.4
41.7
Minor BPS
49.3
0.03
2.1
69.99
46.3

Associated Gene:

Gene:
RNF111
Ensembl Gene ID:
ENSAPLG00000012549
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022205
4350235 - 4383556
33322