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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4387158_4387249_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4387158 - 4387249
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATACCAG
5'SS Class:
major
3'SS Sequence:
TTTACTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTAAACTGAATT
Flanking Amino Acid:
MAYIQITMGVENAVT
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
54.8
44
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.2
0.81
0.7
85.2
29.4
Minor 5ss
42.7
-0.8
3
55.3
48.9
Minor BPS
57.7
0.32
1.7
76.16
39.8

Associated Gene:

Gene:
CCNB2
Ensembl Gene ID:
ENSAPLG00000011947
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012452
4386494 - 4392640
6147