Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4394844_4394944_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4394844 - 4394944

Intron Length:

101

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCTATTTC

5'SS Class:

weak_major

3'SS Sequence:

CCCTTACCTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAG

U12 Branch Point Sequence:

TTTCCCTTACCT

Flanking Amino Acid:

WWTGRLRGKQGHCSPEICYS

Intron Amino Acid Position:

1104

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.3

0.36

1.3

68.2

37.8

Major BPS

75.6

0.64

1.5

34.5

Major PPT

77.1

0.61

0.8

73.5

30.4

Minor 5ss

45.6

-0.5

2.7

61.6

43.2

Minor BPS

77.6

0.95

1.5

93.68

34.1

Associated Gene:

Gene:

MYO1E

Ensembl Gene ID:

ENSAPLG00000010820

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019857

4394713 - 4482054

87342

ENSAPLT00000011335

4394713 - 4457991

63279